Abstract: To support kinds of bioinformatics analyses on high performance computing systems, the ease of use of computing services needs to be improved. Existing bioinformatics platforms lack support for high performance computing systems. To address the issue, a bioinformatics analysis process system is designed and implemented using container technology, common workflow language, job scheduler and etc, which integrates reference datasets, software image libraries and workflows, and provides one- stop online computing services for data, workflows and jobs based on Web. The system can meet the needs of users to rapidly carry out high- throughput bioinformatics analysis on high performance computing systems.